PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc11_g16840
Common NameGSCOC_T00038231001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 135aa    MW: 15283.7 Da    PI: 10.5683
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc11_g16840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.41.8e-1411961397
        NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                 a++ ++  +P  r+kki+k d+++k++ +ea  l+s++ +lf+  l+ +s     e+k++t+k   + aav+r   + dfl+d  p
  Cc11_g16840 11 AEETHRPGIPTHRVKKIMKLDKEIKKVNSEAVFLISNSTQLFLQFLAEKSAQVVLEKKKKTIKLEHLRAAVKRHLpTSDFLLDSLP 96
                 444556679***************************************************************975389*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.02E-161995IPR009072Histone-fold
PfamPF008083.5E-181981IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.0E-192096IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MMAEHEEQNA AEETHRPGIP THRVKKIMKL DKEIKKVNSE AVFLISNSTQ LFLQFLAEKS  60
AQVVLEKKKK TIKLEHLRAA VKRHLPTSDF LLDSLPPPAQ PSDQLPKDRP RPRSSDKPVP  120
PGSRRIDAFF NKCN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239516.21e-56PREDICTED: chromatin accessibility complex protein 1
TrEMBLA0A068V0C89e-94A0A068V0C8_COFCA; Uncharacterized protein
STRINGSolyc05g015330.1.14e-56(Solanum lycopersicum)
STRINGPGSC0003DMT4000748413e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-34nuclear factor Y, subunit C13